PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555267.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 235aa    MW: 25685.4 Da    PI: 6.491
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.39.7e-06533634
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
                    C+ ++++e++ fC  ++  lC+ C  + H
  XP_010555267.1  5 CDVCDKEEASVFCCADEAALCHGCDRHVH 33
                    *************************9988 PP

2zf-B_box28.23.8e-095592338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                     + C+ + e ++ lfC++++  lC++C + +H+   Ht
  XP_010555267.1 55 SPLCDICRERRALLFCQEDRAILCRECDVPIHQAneHT 92
                    689*****************************767765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003364.3E-7447IPR000315B-box-type zinc finger
CDDcd000211.09E-5533No hitNo description
SMARTSM003363.2E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.50953100IPR000315B-box-type zinc finger
PfamPF006431.8E-75592IPR000315B-box-type zinc finger
CDDcd000214.43E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKIWCDVCDK EEASVFCCAD EAALCHGCDR HVHFANKLAG KHLRFSLASP SFKDSPLCDI  60
CRERRALLFC QEDRAILCRE CDVPIHQANE HTQRHNRFLL TGVKLSASPS AYTKASDQTG  120
PVKSRPGSVS GGNQMRRTTS SVSSELFSSP STQQSTSNCY YGFEERNCHQ LSDSGSGSIS  180
EYLMETLPGW RVEDLLDHPS CVSSDNNNGF FRVFGGGGGG GGGSGSSLDH AFWEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555267.11e-176PREDICTED: B-box zinc finger protein 20
SwissprotQ0IGM71e-101BBX20_ARATH; B-box zinc finger protein 20
TrEMBLM4D5X21e-107M4D5X2_BRARP; Uncharacterized protein
STRINGBra011879.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-96DBB family protein